Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs2642978 chr1:247156066 C/T 1.73E-7 176 3.87 20.3 13.03 KM Plot
ESCA rs2730103 chr18:32201608 T/G 7.87E-5 184 13.37 13.03 6.43 KM Plot
ESCA rs2730114 chr18:32125273 G/A 0.000103 181 13.4 12.95 6.43 KM Plot
ESCA rs2730130 chr18:32204694 C/T 7.87E-5 184 13.37 13.03 6.43 KM Plot
ESCA rs2735806 chr14:105595101 A/G 6.97E-6 182 1.57 22.72 13.03 KM Plot
ESCA rs2816604 chr14:105715327 A/C 4.98E-5 180 13.67 12.78 5.7 KM Plot
ESCA rs2818872 chr1:247166017 A/G 1.65E-7 177 3.87 16.7 13.03 KM Plot
ESCA rs2818874 chr1:247170629 T/C 1.71E-7 176 3.87 20.3 13.03 KM Plot
ESCA rs2818893 chr1:247160495 A/C 1.49E-7 178 3.87 18.5 13.03 KM Plot
ESCA rs2838505 chr21:45583903 A/G 5.55E-6 184 2.93 12.87 13.35 KM Plot
ESCA rs2839134 chr21:47591782 C/T 4.89E-5 184 3.93 13.63 13.18 KM Plot
ESCA rs28419258 chr8:41350055 C/T 1.89E-7 182 13 17.27 2.7 KM Plot
ESCA rs28449404 chr4:10019678 C/G 1.39E-5 183 13.07 13.87 7.93 KM Plot
ESCA rs28478353 chr19:5071460 G/A 3.46E-6 181 13.07 14.82 2.93 KM Plot
ESCA rs2849489 chr18:32141140 C/A 6.88E-5 181 13.4 11.93 5.4 KM Plot